IL_8CRX_020
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- UGACG*CGGUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRX_020 not in the Motif Atlas
- Homologous match to IL_4LFB_018
- Geometric discrepancy: 0.0817
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CRX|1|A|U|448
8CRX|1|A|G|449
8CRX|1|A|A|450
8CRX|1|A|C|451
8CRX|1|A|G|452
*
8CRX|1|A|C|465
8CRX|1|A|G|466
8CRX|1|A|G|467
8CRX|1|A|U|468
8CRX|1|A|A|469
8CRX|1|A|A|470
Current chains
- Chain A
- RNA (1537-MER)
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain P
- 30S ribosomal protein S16
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