IL_8CRX_029

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_029 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.0482

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

8CRX|1|A|G|636
8CRX|1|A|A|637
*
8CRX|1|A|U|733
8CRX|1|A|G|734
8CRX|1|A|A|735
8CRX|1|A|C|736

Current chains

Chain A

RNA (1537-MER)

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15