IL_8CRX_059
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GU(5MC)AA*UAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 8CRX|1|A|A|1480
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRX_059 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.4594
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8CRX|1|A|G|1392
8CRX|1|A|U|1393
8CRX|1|A|5MC|1394
8CRX|1|A|A|1395
8CRX|1|A|A|1396
*
8CRX|1|A|U|1478
8CRX|1|A|A|1479
8CRX|1|A|A|1480
8CRX|1|A|G|1481
8CRX|1|A|U|1482
8CRX|1|A|C|1483
Current chains
- Chain A
- RNA (1537-MER)
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S12
- Chain X
- 30S ribosomal protein bS22
- Chain Y
- 32MF mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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