IL_8CRX_092

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_092 not in the Motif Atlas

Geometric match to IL_7A0S_046

Geometric discrepancy: 0.2122

The information below is about IL_7A0S_046

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

8CRX|1|a|U|929
8CRX|1|a|G|930
8CRX|1|a|G|931
8CRX|1|a|U|932
*
8CRX|1|a|A|1016
8CRX|1|a|G|1017

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain y

50S ribosomal protein L30