IL_8CRX_100

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

8CRX|1|a|A|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_100 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.3668

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8CRX|1|a|G|965
8CRX|1|a|G|966
8CRX|1|a|G|967
*
8CRX|1|a|U|978
8CRX|1|a|U|979
8CRX|1|a|A|980
8CRX|1|a|C|981

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L25