IL_8CRX_146
3D structure
- PDB id
- 8CRX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8CRX|1|a|A|2121, 8CRX|1|a|U|2127
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRX_146 not in the Motif Atlas
- Homologous match to IL_5J7L_319
- Geometric discrepancy: 0.078
- The information below is about IL_5J7L_319
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
8CRX|1|a|C|2117
8CRX|1|a|G|2118
8CRX|1|a|A|2119
8CRX|1|a|A|2120
8CRX|1|a|A|2121
8CRX|1|a|5MU|2122
8CRX|1|a|U|2123
8CRX|1|a|C|2124
8CRX|1|a|C|2125
8CRX|1|a|U|2126
8CRX|1|a|U|2127
8CRX|1|a|G|2128
*
8CRX|1|a|C|2144
8CRX|1|a|5MC|2145
8CRX|1|a|U|2146
8CRX|1|a|G|2147
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- 30S ribosomal protein bS22
- Chain c
- 50S ribosomal protein L2
Coloring options: