IL_8CRX_159

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8CRX|1|a|U|2673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRX_159 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1111

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

8CRX|1|a|A|2641
8CRX|1|a|U|2642
8CRX|1|a|C|2643
*
8CRX|1|a|G|2671
8CRX|1|a|G|2672
8CRX|1|a|U|2673
8CRX|1|a|U|2674
8CRX|1|a|U|2675

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain l

50S ribosomal protein L16