IL_8CSP_028

3D structure

PDB id

8CSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CG*UCAAG

Length

7 nucleotides

Bulged bases

8CSP|1|A|C|1330, 8CSP|1|A|A|1331, 8CSP|1|A|A|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSP_028 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2687

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8CSP|1|A|C|1262
8CSP|1|A|G|1263
*
8CSP|1|A|U|1329
8CSP|1|A|C|1330
8CSP|1|A|A|1331
8CSP|1|A|A|1332
8CSP|1|A|G|1333

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain K

28S ribosomal protein S14, mitochondrial