IL_8CSQ_006

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UCU*AAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSQ_006 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.1612

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8CSQ|1|A|U|727
8CSQ|1|A|C|728
8CSQ|1|A|U|729
*
8CSQ|1|A|A|744
8CSQ|1|A|A|745
8CSQ|1|A|A|746
8CSQ|1|A|A|747

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain M

28S ribosomal protein S16, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial