IL_8CSQ_019

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSQ_019 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.2729

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8CSQ|1|A|G|1062
8CSQ|1|A|A|1063
8CSQ|1|A|C|1064
8CSQ|1|A|C|1065
8CSQ|1|A|C|1066
*
8CSQ|1|A|G|1092
8CSQ|1|A|C|1093

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial