IL_8CSR_013

3D structure

PDB id

8CSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

8CSR|1|A|A|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSR_013 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2324

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

8CSR|1|A|U|838
8CSR|1|A|A|839
*
8CSR|1|A|U|850
8CSR|1|A|A|851
8CSR|1|A|A|852

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain M

28S ribosomal protein S16, mitochondrial

Chain U

28S ribosomal protein S26, mitochondrial