IL_8CSU_031
3D structure
- PDB id
- 8CSU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial small subunit assembly intermediate (State C*)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CCGC*GUCAAGG
- Length
- 11 nucleotides
- Bulged bases
- 8CSU|1|A|A|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CSU_031 not in the Motif Atlas
- Geometric match to IL_7A0S_102
- Geometric discrepancy: 0.3675
- The information below is about IL_7A0S_102
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform with intercalation
- Motif group
- IL_58502.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CSU|1|A|C|1261
8CSU|1|A|C|1262
8CSU|1|A|G|1263
8CSU|1|A|C|1264
*
8CSU|1|A|G|1328
8CSU|1|A|U|1329
8CSU|1|A|C|1330
8CSU|1|A|A|1331
8CSU|1|A|A|1332
8CSU|1|A|G|1333
8CSU|1|A|G|1334
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 7
- Methyltransferase-like protein 17, mitochondrial
- Chain C
- 28S ribosomal protein S24, mitochondrial
- Chain K
- 28S ribosomal protein S14, mitochondrial
- Chain Z
- 28S ribosomal protein S33, mitochondrial
Coloring options: