IL_8CVJ_017

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8CVJ|1|1A|G|801, 8CVJ|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_017 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0447

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CVJ|1|1A|G|674
8CVJ|1|1A|A|675
8CVJ|1|1A|A|676
8CVJ|1|1A|A|677
8CVJ|1|1A|C|678
*
8CVJ|1|1A|G|799
8CVJ|1|1A|A|800
8CVJ|1|1A|G|801
8CVJ|1|1A|A|802
8CVJ|1|1A|U|803
8CVJ|1|1A|A|804
8CVJ|1|1A|G|805
8CVJ|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15