IL_8CVJ_083

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_083 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3808

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8CVJ|1|1A|G|2124
8CVJ|1|1A|G|2125
8CVJ|1|1A|A|2126
8CVJ|1|1A|G|2127
*
8CVJ|1|1A|C|2161
8CVJ|1|1A|G|2162
8CVJ|1|1A|C|2163
8CVJ|1|1A|C|2164
8CVJ|1|1A|G|2165
8CVJ|1|1A|G|2166
8CVJ|1|1A|U|2167
8CVJ|1|1A|G|2168
8CVJ|1|1A|A|2169
8CVJ|1|1A|A|2170
8CVJ|1|1A|A|2171
8CVJ|1|1A|U|2172
8CVJ|1|1A|A|2173
8CVJ|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA