IL_8CVJ_209

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGUAAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

8CVJ|1|2A|U|1026, 8CVJ|1|2A|A|1127, 8CVJ|1|2A|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_209 not in the Motif Atlas

Geometric match to IL_7RQB_040

Geometric discrepancy: 0.0655

The information below is about IL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8CVJ|1|2A|G|1024
8CVJ|1|2A|G|1025
8CVJ|1|2A|U|1026
8CVJ|1|2A|A|1027
8CVJ|1|2A|A|1028
8CVJ|1|2A|A|1029
8CVJ|1|2A|G|1030
*
8CVJ|1|2A|C|1124
8CVJ|1|2A|G|1125
8CVJ|1|2A|A|1126
8CVJ|1|2A|A|1127
8CVJ|1|2A|A|1128
8CVJ|1|2A|A|1129
8CVJ|1|2A|U|1130
8CVJ|1|2A|G|1131
8CVJ|1|2A|A|1132
8CVJ|1|2A|U|1133
8CVJ|1|2A|C|1135
8CVJ|1|2A|G|1136
8CVJ|1|2A|G|1137
8CVJ|1|2A|G|1138
8CVJ|1|2A|G|1139
8CVJ|1|2A|C|1140

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2Q

50S ribosomal protein L16