IL_8CVJ_213

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8CVJ|1|2A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_213 not in the Motif Atlas

Geometric match to IL_7RQB_047

Geometric discrepancy: 0.0802

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

8CVJ|1|2A|C|1208
8CVJ|1|2A|G|1209
8CVJ|1|2A|A|1210
8CVJ|1|2A|U|1211
8CVJ|1|2A|G|1212
8CVJ|1|2A|A|1213
8CVJ|1|2A|A|1214
8CVJ|1|2A|G|1215
*
8CVJ|1|2A|U|1234
8CVJ|1|2A|G|1235
8CVJ|1|2A|G|1236
8CVJ|1|2A|A|1237
8CVJ|1|2A|G|1238

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20