IL_8CVJ_303

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8CVJ|1|2a|A|532, 8CVJ|1|2a|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_303 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.1162

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8CVJ|1|2a|G|515
8CVJ|1|2a|PSU|516
8CVJ|1|2a|G|517
8CVJ|1|2a|C|518
8CVJ|1|2a|C|519
8CVJ|1|2a|A|520
8CVJ|1|2a|G|521
*
8CVJ|1|2a|C|528
8CVJ|1|2a|G|529
8CVJ|1|2a|G|530
8CVJ|1|2a|U|531
8CVJ|1|2a|A|532
8CVJ|1|2a|A|533
8CVJ|1|2a|U|534
8CVJ|1|2a|A|535
8CVJ|1|2a|C|536

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2v

MF-mRNA

Chain 2w

Transfer RNA; tRNA