IL_8CVK_055

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

8CVK|1|1A|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_055 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.0657

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8CVK|1|1A|C|1437
8CVK|1|1A|U|1438
8CVK|1|1A|A|1439
8CVK|1|1A|G|1440
*
8CVK|1|1A|C|1551
8CVK|1|1A|G|1552
8CVK|1|1A|A|1553
8CVK|1|1A|A|1554
8CVK|1|1A|G|1555

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains