IL_8CVK_059

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

8CVK|1|1A|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_059 not in the Motif Atlas

Geometric match to IL_7RQB_061

Geometric discrepancy: 0.177

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8CVK|1|1A|U|1481
8CVK|1|1A|G|1482
*
8CVK|1|1A|C|1506
8CVK|1|1A|A|1507
8CVK|1|1A|A|1508
8CVK|1|1A|C|1509
8CVK|1|1A|A|1509|||A
8CVK|1|1A|A|1509|||B
8CVK|1|1A|G|1510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains