IL_8CVK_084

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_084 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3673

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8CVK|1|1A|G|2124
8CVK|1|1A|G|2125
8CVK|1|1A|A|2126
8CVK|1|1A|G|2127
*
8CVK|1|1A|C|2161
8CVK|1|1A|G|2162
8CVK|1|1A|C|2163
8CVK|1|1A|C|2164
8CVK|1|1A|G|2165
8CVK|1|1A|G|2166
8CVK|1|1A|U|2167
8CVK|1|1A|G|2168
8CVK|1|1A|A|2169
8CVK|1|1A|A|2170
8CVK|1|1A|A|2171
8CVK|1|1A|U|2172
8CVK|1|1A|A|2173
8CVK|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA