IL_8CVK_166
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVK_166 not in the Motif Atlas
- Homologous match to IL_4LFB_055
- Geometric discrepancy: 0.0848
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
8CVK|1|1a|C|1303
8CVK|1|1a|G|1304
8CVK|1|1a|G|1305
8CVK|1|1a|A|1306
8CVK|1|1a|U|1307
8CVK|1|1a|U|1308
*
8CVK|1|1a|A|1329
8CVK|1|1a|U|1330
8CVK|1|1a|G|1331
8CVK|1|1a|A|1332
8CVK|1|1a|A|1333
8CVK|1|1a|G|1334
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1m
- 30S ribosomal protein S13
- Chain 1u
- 30S ribosomal protein Thx
Coloring options: