IL_8CVK_184

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

8CVK|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_184 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.1472

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8CVK|1|2A|C|280
8CVK|1|2A|G|281
8CVK|1|2A|A|282
8CVK|1|2A|A|283
8CVK|1|2A|U|284
*
8CVK|1|2A|A|357
8CVK|1|2A|U|358
8CVK|1|2A|A|359
8CVK|1|2A|G|360

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains