3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVK_189 not in the Motif Atlas
Geometric match to IL_7RQB_016
Geometric discrepancy: 0.0805
The information below is about IL_7RQB_016
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_17136.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
24

Unit IDs

8CVK|1|2A|U|606
8CVK|1|2A|U|607
8CVK|1|2A|A|608
8CVK|1|2A|A|609
8CVK|1|2A|G|610
*
8CVK|1|2A|C|618
8CVK|1|2A|G|619
8CVK|1|2A|G|620
8CVK|1|2A|A|621
8CVK|1|2A|G|622

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2F
50S ribosomal protein L4
Chain 2P
50S ribosomal protein L15

Coloring options:


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