3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
8CVK|1|2A|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVK_269 not in the Motif Atlas
Geometric match to IL_7RQB_102
Geometric discrepancy: 0.058
The information below is about IL_7RQB_102
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.1
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

8CVK|1|2A|U|2636
8CVK|1|2A|U|2637
8CVK|1|2A|G|2638
8CVK|1|2A|A|2639
8CVK|1|2A|G|2640
*
8CVK|1|2A|C|2774
8CVK|1|2A|A|2775
8CVK|1|2A|A|2776
8CVK|1|2A|G|2777
8CVK|1|2A|A|2778
8CVK|1|2A|U|2779
8CVK|1|2A|G|2780
8CVK|1|2A|A|2781
8CVK|1|2A|G|2782

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2E
50S ribosomal protein L3
Chain 2N
50S ribosomal protein L13

Coloring options:


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