IL_8CVK_269
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 8CVK|1|2A|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVK_269 not in the Motif Atlas
- Geometric match to IL_7RQB_102
- Geometric discrepancy: 0.058
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8CVK|1|2A|U|2636
8CVK|1|2A|U|2637
8CVK|1|2A|G|2638
8CVK|1|2A|A|2639
8CVK|1|2A|G|2640
*
8CVK|1|2A|C|2774
8CVK|1|2A|A|2775
8CVK|1|2A|A|2776
8CVK|1|2A|G|2777
8CVK|1|2A|A|2778
8CVK|1|2A|U|2779
8CVK|1|2A|G|2780
8CVK|1|2A|A|2781
8CVK|1|2A|G|2782
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2E
- 50S ribosomal protein L3
- Chain 2N
- 50S ribosomal protein L13
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