IL_8CVK_367

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8CVK|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_367 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4226

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8CVK|1|2A|C|2129
8CVK|1|2A|U|2130
8CVK|1|2A|G|2131
8CVK|1|2A|U|2132
8CVK|1|2A|G|2133
8CVK|1|2A|A|2134
8CVK|1|2A|A|2135
8CVK|1|2A|C|2136
*
8CVK|1|2A|G|2155
8CVK|1|2A|G|2156
8CVK|1|2A|G|2157
8CVK|1|2A|A|2158
8CVK|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains