3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CGAUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
8CVL|1|1A|U|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVL_045 not in the Motif Atlas
Geometric match to IL_7RQB_047
Geometric discrepancy: 0.0324
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

8CVL|1|1A|C|1208
8CVL|1|1A|G|1209
8CVL|1|1A|A|1210
8CVL|1|1A|U|1211
8CVL|1|1A|G|1212
8CVL|1|1A|A|1213
8CVL|1|1A|A|1214
8CVL|1|1A|G|1215
*
8CVL|1|1A|U|1234
8CVL|1|1A|G|1235
8CVL|1|1A|G|1236
8CVL|1|1A|A|1237
8CVL|1|1A|G|1238

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1U
50S ribosomal protein L20

Coloring options:


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