IL_8CVL_084

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVL_084 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3811

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8CVL|1|1A|G|2124
8CVL|1|1A|G|2125
8CVL|1|1A|A|2126
8CVL|1|1A|G|2127
*
8CVL|1|1A|C|2161
8CVL|1|1A|G|2162
8CVL|1|1A|C|2163
8CVL|1|1A|C|2164
8CVL|1|1A|G|2165
8CVL|1|1A|G|2166
8CVL|1|1A|U|2167
8CVL|1|1A|G|2168
8CVL|1|1A|A|2169
8CVL|1|1A|A|2170
8CVL|1|1A|A|2171
8CVL|1|1A|U|2172
8CVL|1|1A|A|2173
8CVL|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA