IL_8CVL_134
3D structure
- PDB id
- 8CVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8CVL|1|1a|A|532, 8CVL|1|1a|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVL_134 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.0962
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CVL|1|1a|G|515
8CVL|1|1a|PSU|516
8CVL|1|1a|G|517
8CVL|1|1a|C|518
8CVL|1|1a|C|519
8CVL|1|1a|A|520
8CVL|1|1a|G|521
*
8CVL|1|1a|C|528
8CVL|1|1a|G|529
8CVL|1|1a|G|530
8CVL|1|1a|U|531
8CVL|1|1a|A|532
8CVL|1|1a|A|533
8CVL|1|1a|U|534
8CVL|1|1a|A|535
8CVL|1|1a|C|536
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
- Chain 1v
- MF-mRNA
- Chain 1w
- Transfer RNA; tRNA
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