3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVL_279 not in the Motif Atlas
Geometric match to IL_7RQB_110
Geometric discrepancy: 0.068
The information below is about IL_7RQB_110
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_83162.5
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

8CVL|1|2A|U|2847
8CVL|1|2A|G|2848
8CVL|1|2A|U|2849
8CVL|1|2A|A|2850
8CVL|1|2A|A|2851
8CVL|1|2A|G|2852
*
8CVL|1|2A|U|2865
8CVL|1|2A|U|2866
8CVL|1|2A|G|2867
8CVL|1|2A|A|2868
8CVL|1|2A|G|2869

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2R
50S ribosomal protein L17
Chain 2T
50S ribosomal protein L19

Coloring options:


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