3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CUGUGAAC*GGGAG
Length
13 nucleotides
Bulged bases
8CVL|1|2A|U|2132
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVL_365 not in the Motif Atlas
Homologous match to IL_3U4M_004
Geometric discrepancy: 0.4316
The information below is about IL_3U4M_004
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

8CVL|1|2A|C|2129
8CVL|1|2A|U|2130
8CVL|1|2A|G|2131
8CVL|1|2A|U|2132
8CVL|1|2A|G|2133
8CVL|1|2A|A|2134
8CVL|1|2A|A|2135
8CVL|1|2A|C|2136
*
8CVL|1|2A|G|2155
8CVL|1|2A|G|2156
8CVL|1|2A|G|2157
8CVL|1|2A|A|2158
8CVL|1|2A|G|2159

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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