IL_8CVL_365

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8CVL|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVL_365 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4316

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8CVL|1|2A|C|2129
8CVL|1|2A|U|2130
8CVL|1|2A|G|2131
8CVL|1|2A|U|2132
8CVL|1|2A|G|2133
8CVL|1|2A|A|2134
8CVL|1|2A|A|2135
8CVL|1|2A|C|2136
*
8CVL|1|2A|G|2155
8CVL|1|2A|G|2156
8CVL|1|2A|G|2157
8CVL|1|2A|A|2158
8CVL|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains