IL_8CVM_006

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAUGUC*GU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_006 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1927

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8CVM|1|a|G|131
8CVM|1|a|A|132
8CVM|1|a|A|133
8CVM|1|a|U|134
8CVM|1|a|G|135
8CVM|1|a|U|136
8CVM|1|a|C|137
*
8CVM|1|a|G|152
8CVM|1|a|U|153

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23