IL_8CVM_010

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_010 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1032

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8CVM|1|a|U|246
8CVM|1|a|G|247
8CVM|1|a|A|248
8CVM|1|a|G|249
8CVM|1|a|U|250
8CVM|1|a|A|251
8CVM|1|a|G|252
*
8CVM|1|a|C|260
8CVM|1|a|G|261
8CVM|1|a|A|262
8CVM|1|a|A|263
8CVM|1|a|A|264
8CVM|1|a|G|265

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15