IL_8CVM_015

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUG*UC

Length

5 nucleotides

Bulged bases

8CVM|1|a|U|675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_015 not in the Motif Atlas

Homologous match to IL_7A0S_012

Geometric discrepancy: 0.3472

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8CVM|1|a|G|674
8CVM|1|a|U|675
8CVM|1|a|G|676
*
8CVM|1|a|U|750
8CVM|1|a|C|751

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15