IL_8CVM_033
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCUAG*CGAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_033 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.1751
- The information below is about IL_5J7L_274
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8CVM|1|a|U|960
8CVM|1|a|C|961
8CVM|1|a|U|962
8CVM|1|a|A|963
8CVM|1|a|G|964
*
8CVM|1|a|C|982
8CVM|1|a|G|983
8CVM|1|a|A|984
8CVM|1|a|A|985
8CVM|1|a|A|986
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain f
- 50S ribosomal protein L5
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L25
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