IL_8CVM_034

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

8CVM|1|a|A|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_034 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.3668

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8CVM|1|a|G|965
8CVM|1|a|G|966
8CVM|1|a|G|967
*
8CVM|1|a|U|978
8CVM|1|a|U|979
8CVM|1|a|A|980
8CVM|1|a|C|981

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L5

Chain u

50S ribosomal protein L25