IL_8CVM_048
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUGAGUAG*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_048 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0862
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8CVM|1|a|A|1339
8CVM|1|a|U|1340
8CVM|1|a|G|1341
8CVM|1|a|A|1342
8CVM|1|a|G|1343
8CVM|1|a|U|1344
8CVM|1|a|A|1345
8CVM|1|a|G|1346
*
8CVM|1|a|U|2194
8CVM|1|a|G|2195
8CVM|1|a|A|2196
8CVM|1|a|A|2197
8CVM|1|a|A|2198
8CVM|1|a|U|2199
8CVM|1|a|U|2200
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
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