IL_8CVM_057

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUG*UGAG

Length

7 nucleotides

Bulged bases

8CVM|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_057 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.3025

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8CVM|1|a|C|1597
8CVM|1|a|U|1598
8CVM|1|a|G|1599
*
8CVM|1|a|U|1762
8CVM|1|a|G|1763
8CVM|1|a|A|1764
8CVM|1|a|G|1765

Current chains

Chain a

23S ribosomal RNA

Nearby chains