IL_8CVM_067

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8CVM|1|a|G|2175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_067 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0727

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|A|1853
8CVM|1|a|C|1854
8CVM|1|a|U|1855
8CVM|1|a|C|1856
8CVM|1|a|G|1857
8CVM|1|a|G|1858
*
8CVM|1|a|C|2173
8CVM|1|a|U|2174
8CVM|1|a|G|2175
8CVM|1|a|U|2176

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14