IL_8CVM_068

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8CVM|1|a|U|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_068 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0697

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8CVM|1|a|C|1870
8CVM|1|a|G|1871
8CVM|1|a|U|1872
8CVM|1|a|A|1873
8CVM|1|a|A|1874
8CVM|1|a|C|1875
*
8CVM|1|a|G|1880
8CVM|1|a|G|1881
8CVM|1|a|A|1882
8CVM|1|a|U|1883
8CVM|1|a|A|1884
8CVM|1|a|A|1885
8CVM|1|a|G|1886

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2