IL_8CVM_069

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAGC*GUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_069 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2092

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8CVM|1|a|U|1894
8CVM|1|a|G|1895
8CVM|1|a|A|1896
8CVM|1|a|G|1897
8CVM|1|a|C|1898
*
8CVM|1|a|G|1927
8CVM|1|a|U|1928
8CVM|1|a|G|1929
8CVM|1|a|A|1930
8CVM|1|a|G|1931

Current chains

Chain a

23S ribosomal RNA

Nearby chains