IL_8CVM_072

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8CVM|1|a|G|1984, 8CVM|1|a|U|1999, 8CVM|1|a|U|2003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_072 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0568

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8CVM|1|a|U|1981
8CVM|1|a|G|1982
8CVM|1|a|C|1983
8CVM|1|a|G|1984
8CVM|1|a|A|1985
8CVM|1|a|A|1986
8CVM|1|a|G|1987
*
8CVM|1|a|C|1996
8CVM|1|a|G|1997
8CVM|1|a|A|1998
8CVM|1|a|U|1999
8CVM|1|a|G|2000
8CVM|1|a|U|2001
8CVM|1|a|A|2002
8CVM|1|a|U|2003
8CVM|1|a|A|2004

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2