IL_8CVM_078

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAG*CGUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_078 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.2311

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|U|2047
8CVM|1|a|G|2048
8CVM|1|a|A|2049
8CVM|1|a|G|2050
*
8CVM|1|a|C|2057
8CVM|1|a|G|2058
8CVM|1|a|U|2059
8CVM|1|a|A|2060
8CVM|1|a|G|2061

Current chains

Chain a

23S ribosomal RNA

Nearby chains