IL_8CVM_092

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_092 not in the Motif Atlas

Homologous match to IL_5J7L_336

Geometric discrepancy: 0.0894

The information below is about IL_5J7L_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|C|2638
8CVM|1|a|PSU|2639
8CVM|1|a|G|2640
8CVM|1|a|A|2641
*
8CVM|1|a|U|2675
8CVM|1|a|G|2676
8CVM|1|a|G|2677

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain l

50S ribosomal protein L16