IL_8CVM_093
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 8CVM|1|a|U|2673
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVM_093 not in the Motif Atlas
- Geometric match to IL_7RQB_094
- Geometric discrepancy: 0.1111
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
8CVM|1|a|A|2641
8CVM|1|a|U|2642
8CVM|1|a|C|2643
*
8CVM|1|a|G|2671
8CVM|1|a|G|2672
8CVM|1|a|U|2673
8CVM|1|a|U|2674
8CVM|1|a|U|2675
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein bL37
- Chain l
- 50S ribosomal protein L16
Coloring options: