IL_8CVM_094

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_094 not in the Motif Atlas

Geometric match to IL_3BNT_006

Geometric discrepancy: 0.1181

The information below is about IL_3BNT_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8CVM|1|a|C|2643
8CVM|1|a|U|2644
8CVM|1|a|U|2645
*
8CVM|1|a|A|2669
8CVM|1|a|U|2670
8CVM|1|a|G|2671

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein bL37

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16