IL_8CVM_097

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8CVM|1|a|G|2758, 8CVM|1|a|A|2759

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_097 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0795

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8CVM|1|a|C|2692
8CVM|1|a|U|2693
8CVM|1|a|C|2694
*
8CVM|1|a|G|2756
8CVM|1|a|C|2757
8CVM|1|a|G|2758
8CVM|1|a|A|2759
8CVM|1|a|G|2760

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain z

50S ribosomal protein L32