IL_8CVM_110

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGGACG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_110 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.098

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|U|3027
8CVM|1|a|G|3028
8CVM|1|a|G|3029
8CVM|1|a|A|3030
8CVM|1|a|C|3031
8CVM|1|a|G|3032
*
8CVM|1|a|U|3045
8CVM|1|a|G|3046
8CVM|1|a|G|3047
8CVM|1|a|A|3048
8CVM|1|a|G|3049

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19