IL_8CVM_112

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

8CVM|1|b|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVM_112 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.3271

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8CVM|1|b|U|17
8CVM|1|b|G|18
*
8CVM|1|b|C|65
8CVM|1|b|A|66
8CVM|1|b|A|67

Current chains

Chain b

5S ribosomal RNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain n

50S ribosomal protein L18

Chain u

50S ribosomal protein L25