IL_8CVO_001

3D structure

PDB id

8CVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

8CVO|1|A|G|910

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVO_001 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0965

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

8CVO|1|A|G|909
8CVO|1|A|G|910
8CVO|1|A|G|911
*
8CVO|1|A|U|1377
8CVO|1|A|U|1378

Current chains

Chain A

16S ribosomal RNA

Nearby chains