IL_8CVO_018

3D structure

PDB id

8CVO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, head domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVO_018 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.2436

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8CVO|1|A|C|1245
8CVO|1|A|G|1246
8CVO|1|A|A|1247
8CVO|1|A|G|1248
*
8CVO|1|A|U|1259
8CVO|1|A|G|1260
8CVO|1|A|A|1261
8CVO|1|A|G|1262

Current chains

Chain A

16S ribosomal RNA

Nearby chains